Técnico Académico Asociado "C"
Laboratorio Nacional de Ciencias de la Sostenibilidad, Instituto de Ecología, Universidad Nacional Autónoma de México
Email: rgarcia@iecologia.unam.mx
Estudios formales de Ingeniería en Cibernética y Sistemas Computacionales en la Universidad La Salle. Maestro en Ciencias de la Complejidad por la Universidad Autónoma de la Ciudad de México.
Desarrollador de software para investigación científica. Hacker, data wrangler.
Pyveplot, SVG Hiveplot Python API. https://pypi.python.org/project/pyveplot/
visibility_graph, Python implementation of the Visibility Graph algorithm for the creation of networks from time series. https://pypi.python.org/project/visibility_graph/
sleuth-automation, an object-oriented API and wrapper scripts for the SLEUTH urban growth model. https://pypi.python.org/project/sleuth-automation/
road-agent, framework for agent-based modeling of urban mobility https://pypi.python.org/project/road-agent/
Rodrigo García Herrera y Paola Massyel García Meneses (2022) 'Infraestructura ciclista virtual: fuerza en números para más seguridad al pedalear', Astrolabio, Vol. 1, no. 8, ISSN 2594-231X https://uacm.edu.mx/portals/2/numeros/astror8.pdf
Rivera-Núñez, T. et al. (2022) Unravelling the Paradoxical Seasonal Food Scarcity in a Peasant Microregion of Mexico. Sustainability, 14(11), 6751. https://doi.org/10.3390/su14116751
Rivera-Núñez, T. et al. (2020) ‘Peasant micropower in an agrifood supply system of the Sierra Madre of Chiapas, Mexico’, Journal of Rural Studies, 78, pp. 185–198. https://doi.org/10.1016/j.jrurstud.2020.06.027||10.1016/j.jrurstud.2020.06.027
García-Herrera, R. and García-Meneses, P. M. (2020) ‘Social Cycling: Critical Mass Through a Mobile App’, Frontiers in Sustainable Cities, 2, p. 36. https://doi.org/10.3389/frsc.2020.00036||10.3389/frsc.2020.00036]
Martínez-García, M. et al. (2018) ‘A systematic approach to analyze the social determinants of cardiovascular disease’, PLoS ONE, 13(1), p. e0190960. https://doi.org/10.1371/journal.pone.0190960||10.1371/journal.pone.0190960
Siqueiros-García, J. M. et al. (2017) ‘A game-theory modeling approach to utility and strength of interactions dynamics in biomedical research social networks’, Complex Adaptive Systems Modeling, 5(1), p. 5. https://doi.org/10.1186/s40294-017-0044-0||10.1186/s40294-017-0044-0
Romero-Hidalgo, S. et al. (2017) ‘Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing’, Nature Communications, 8(1), p. 1005. https://doi.org/10.1038/s41467-017-01194-z||10.1038/s41467-017-01194-z
Tovar, H. et al. (2015) ‘Transcriptional master regulator analysis in breast cancer genetic networks’, Computational Biology and Chemistry, 59, pp. 67–77. https://doi.org/10.1016/j.compbiolchem.2015.08.007||10.1016/j.compbiolchem.2015.08.007
Hernández Lemus, E. et al. (2015) ‘The role of master regulators in gene regulatory networks’, Papers in Physics, 7(0), p. 070011. https://doi.org/10.4279/pip.070011||10.4279/pip.070011]
Siqueiros-García, J. M. et al. (2014) ‘Mapping the Structure and Dynamics of Genomics-Related MeSH Terms Complex Networks’, PLoS ONE, 9(4), p. e92639. https://doi.org/10.1371/journal.pone.0092639||10.1371/journal.pone.0092639
Moreno-Estrada, A. et al. (2014) ‘The genetics of Mexico recapitulates Native American substructure and affects biomedical traits’, Science, 344(6189), pp. 1280–1285. https://doi.org/10.1126/science.1251688||10.1126/science.1251688]
Baca-Lopez, K. et al. (2013) ‘A 3-state model for multidimensional genomic data integration’, Systems Biomedicine, 1(2), pp. 122–129. https://doi.org/10.4161/sysb.25898||10.4161/sysb.25898]
Rodrigo García Herrera (2021) «Análisis de redes de calles: comparativo entre áreas metropolitanas de Sao Paulo y el Valle de México» en Jacobi, P. R., Ricárdez, M. F. B., Torres, P. H. C., Zioni, S., & Venancio-Flores, A. (eds) Dilemas ambientais-urbanos em duas metrópoles latino americanas: São Paulo e Cidade do México no século XXI. Paco e Littera. ISBN: 978-65-5840-194-0 Leer en Google Books
Peña-Sanabria, K. A., Bracamontes Nájera, L., Benítez, M., Cremaschi A., Jönsson, M., Acevedo, F., Tadeo Robledo, M., Espinosa Calderón, A., Mora, K., Kleinfeld Ávila, T., Wegier, A., García Maning, G., Escalona Aguilar, M.A., García-Herrera, R., Espinola, C. (2020). Semillas para el bien común. Compendio de experiencias latinoamericanas y herramientas legales vigentes en México. Laboratorio Nacional de Ciencias de la Sostenibilidad, Instituto de Ecología, UNAM. Ciudad de México, México. Descargar PDF.
Hernández-Lemus, E., Espinal-Enríquez, J. and García-Herrera, R. (2017) ‘Handling Big Data in Precision Medicine’, in Progress and Challenges in Precision Medicine. Elsevier, pp. 251–268. https://doi.org/10.1016/B978-0-12-809411-2.00014-3||10.1016/B978-0-12-809411-2.00014-3
Espinal-Enríquez, J. et al. (2015) ‘A Literature-Based Approach to a Narco-Network’, in Aiello, L. M. and McFarland, D. (eds) Social Informatics. Cham: Springer International Publishing (Lecture Notes in Computer Science), pp. 97–101. https://doi.org/10.1007/978-3-319-15168-7_13||10.1007/978-3-319-15168-7_13
Paola Massyel García Meneses y Rodrigo García (2022) '¿En qué nos gastamos lo que queda?'. Punto Crítico No.2, https://doi.org/10.5281/zenodo.6610656
García Herrera, R (2014) Ver para pensar, Deveras, revista de ciencia para niños, 5(25), pp. 10-11. ISSN: 2007-6169
Rosell, J. A., Olson, M. E., Martínez-Garza, C., & Martínez-Méndez, N. (2022). Functional diversity in woody organs of tropical dry forests and implications for restoration. Sustainability, 14(14), 8362. https://doi.org/10.3390/su14148362
Tellman, B., Eakin, H., Janssen, M. A., de Alba, F., & Turner II, B. L. (2021). The role of institutional entrepreneurs and informal land transactions in Mexico City’s urban expansion. World Development, 140, 105374. http://doi.org/10.1016/j.worlddev.2020.105374||10.1016/j.worlddev.2020.105374
Moreno Santillán, D. D. et al. (2021). Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology, 00, 1-19. https://doi.org/10.1111/mec.16027||10.1111/mec.16027
Yocelyn Gutiérrez Guerrero (2020). Genómica de la diversificación de las dietas y evolución de la nectarivoría en murciélagos Filostómidos. PhD Thesis. Universidad Nacional Autónoma de México.
Barajas, H. R. et al. (2020). Testing the two-step model of plant root microbiome acquisition under multiple plant species and soil sources. Frontiers in microbiology, 11, 2445. https://doi.org/10.3389/fmicb.2020.542742||10.3389/fmicb.2020.542742
Barrón-Sandoval, A. (2020) Efecto de las condiciones ambientales y de la composición de procariontes del suelo en el potencial de fijación de nitrógeno en dos zonas áridas de México. Master's Thesis. National Autonomous University of Mexico.
Gutiérrez-Guerrero, Y. T. et al. (2020) ‘Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats’, GigaScience, 9(6), p. giaa059. https://doi.org/10.1093/gigascience/giaa059||10.1093/gigascience/giaa059 .
Gómez-Maqueo, X. et al. (2020) ‘The seed water content as a time-independent physiological trait during germination in wild tree species such as Ceiba aesculifolia’, Scientific Reports, 10(1), p. 10429. https://doi.org/10.1038/s41598-020-66759-3||10.1038/s41598-020-66759-3
Barajas, H. R. et al. (2020) ‘Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources’, Frontiers in Microbiology, 11, p. 542742. https://doi.org/10.3389/fmicb.2020.542742||10.3389/fmicb.2020.542742
Saldaña-Meyer, R. et al. (2019) RNA interactions with CTCF are essential for its proper function. preprint. Molecular Biology. https://doi.org/10.1101/530014||10.1101/530014
Miquelajauregui, Y., Cumming, S. G. and Gauthier, S. (2019) ‘Sensitivity of Boreal Carbon Stocks to Fire Return Interval, Fire Severity and Fire Season: A Simulation Study of Black Spruce Forests’, Ecosystems, 22(3), pp. 544–562. https://doi.org/10.1007/s10021-018-0287-4||10.1007/s10021-018-0287-4
Barajas, H. R. et al. (2019) ‘Global genomic similarity and core genome sequence diversity of the Streptococcus genus as a toolkit to identify closely related bacterial species in complex environments’, PeerJ, 6, p. e6233. https://doi.org/10.7717/peerj.6233||10.7717/peerj.6233
Charli-Joseph, L. et al. (2018) ‘Promoting agency for social-ecological transformation: a transformation-lab in the Xochimilco social-ecological system’, Ecology and Society, 23(2), p. art46. https://doi.org/10.5751/ES-10214-230246||10.5751/ES-10214-230246
Barrera-Redondo, J., Ramírez-Barahona, S. and Eguiarte, L. E. (2018) ‘Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity: molecular evolution in tree ferns’, Evolution, 72(5), pp. 1050–1062. https://doi.org/10.1111/evo.13475||10.1111/evo.13475
Yong-Mendoza, S. (2017) “Expresión genética de Mycobacterium tuberculosis latente dentro de macrófagos humanos”, Master's Thesis. National Polytechnic Institute, Mexico.
Espinal-Enríquez, J. et al. (2017) ‘RNA-Seq based genome-wide analysis reveals loss of inter-chromosomal regulation in breast cancer’, Scientific Reports, 7(1), p. 1760. https://doi.org/10.1038/s41598-017-01314-1||10.1038/s41598-017-01314-1
Drago-García, D., Espinal-Enríquez, J. and Hernández-Lemus, E. (2017) ‘Network analysis of EMT and MET micro-RNA regulation in breast cancer’, Scientific Reports, 7(1), p. 13534. https://doi.org/10.1038/s41598-017-13903-1||10.1038/s41598-017-13903-1
E. D. López Espinoza, Y. Miquelajauregui, E. Luna Pérez, F. Serrano Candela, R. García, L. Bojórquez Tapia (2018) Estudio numérico de un escenario de crecimiento urbano para el centro de México y su impacto en la meteorología local. Presentación en la Reunión Anual de la Unión Geofísica Mexicana.
Yong-Mendoza S. (2018) “Expresión genética de Mycobacterium tuberculosis latente dentro de macrófagos humanos”. Segundo Encuentro Anual de Investigación INPER.
Miquelajauregui, Y. et. al. (2018) Impacts of future urban growth on the local climate in Mexico City Metropolitan Area: implications for urban socio-hydrological vulnerability. Conference on Complex Systems, Tesalonia.
López Espinoza, E. D. et. al. (2018) Estudio numérico de un escenario de crecimiento urbano para el centro de México y su impacto en la meteorología local. Reunión anual Unión Geofísica Mexicana, A.C.
Peralta Blanco, R and García-Herrera, R. (2017) Geocalle: repositorio web para cartografía participativa de población en situación de calle. XXII Congreso Nacional SELPER México, organized by the Latin American Society for Remote Perception and Spatial Information Systems.